Package: iPRSue 1.0.0

iPRSue: Individual Polygenic Risk Score Uncertainty Estimation

Provides tools for estimating uncertainty in individual polygenic risk scores (PRSs) using both sampling-based and analytical methods, as well as the Best Linear Unbiased Estimator (BLUE). These methods quantify variability in PRS estimates for both binary and quantitative traits. See Henderson (1975) <doi:10.2307/2529430> for more details.

Authors:Dovini Jayasinghe [aut, cre, cph], Hong Lee [aut, cph]

iPRSue_1.0.0.tar.gz
iPRSue_1.0.0.zip(r-4.7)iPRSue_1.0.0.zip(r-4.6)iPRSue_1.0.0.zip(r-4.5)
iPRSue_1.0.0.tgz(r-4.6-any)iPRSue_1.0.0.tgz(r-4.5-any)
iPRSue_1.0.0.tar.gz(r-4.7-any)iPRSue_1.0.0.tar.gz(r-4.6-any)
iPRSue_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iPRSue/json (API)

# Install 'iPRSue' in R:
install.packages('iPRSue', repos = c('https://dovinij.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dovinij/iprsue/issues

On CRAN:

Conda:

3.65 score 1 scripts 435 downloads 6 exports 89 dependencies

Last updated from:8f44252627. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR148
source / vignettesOK199
linux-release-x86_64ERROR174
macos-release-arm64ERROR213
macos-oldrel-arm64ERROR131
windows-develERROR126
windows-releaseERROR115
windows-oldrelERROR113
wasm-releaseOK136

Exports:BLUE_estimates_BTBLUE_estimates_QTGWAS_BTGWAS_QTiPRSue_estimates_BTiPRSue_estimates_QT

Dependencies:backportsbigassertrbigparallelrbigstatsrbitbit64bootbroomclicliprcodetoolscowplotcpp11crayondata.tabledoParalleldplyrfarverffflockforcatsforeachformula.toolsgenericsggplot2glmnetgluegtablehavenhmsisobanditeratorsjomolabelinglatticelifecyclelme4logistfmagrittrMASSMatrixmgcvmiceminqamitmlnlmenloptrnnetnumDerivoperator.toolsordinalpanparallellypillarpkgconfigprettyunitsprogresspspurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasRhpcBLASctlrlangrmiorpartRSpectraS7scalesshapestringistringrsurvivaltibbletidyrtidyselecttzdbucminfutf8vctrsviridisLitevroomwithr