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  1. GPflexViz::example_data1
    gwas_data with all chromosome information This contains Single nucleotide polymorphism (SNP) information.
  2. GPflexViz::example_data10
    regression_data This contains estimation and p value data from a/the regression summary output/s.
  3. GPflexViz::example_data11
    CI_data This contains individual level data for constructing confidence intervals
  4. GPflexViz::example_data2
    gwas_data with partial chromosome information This contains Single nucleotide polymorphism (SNP) information.
  5. GPflexViz::example_data3
    accuracy_data with full information This contains prediction accuracy related information.
  6. GPflexViz::example_data4
    accuracy_data with partial information This contains prediction accuracy related information.
  7. GPflexViz::example_data5
    comparison_data This contains prediction accuracy related information for model comparison.
  8. GPflexViz::example_data6
    accuracy_diff_data This contains prediction accuracy related information for detailed model comparison (2 methods at a time).
  9. GPflexViz::example_data7
    ld_data This contains Linkage Disequilibrium (LD) related data (e.g. pair-wise variant correlation squared).
  10. GPflexViz::example_data8
    distribution_data This contains data for consruction of histograms/density plots, with at least 1 column.
  11. GPflexViz::example_data9
    correlation_matrix A 20x20 symmetric matrix containing correlation coefficients between various variables (e.g. varients, individuals).
  12. GxEprs::Bcov_discovery
    Covariate data file of the discovery dataset when the outcome is binary. This contains covariate information of the individuals in the discovery dataset following confounders.
  13. GxEprs::Bcov_target
    Covariate data file of the target dataset when the outcome is binary. This contains covariate information of the individuals in the target dataset following confounders.
  14. GxEprs::Bphe_discovery
    Phenotype data file of the discovery dataset when the outcome is binary. This contains phenotype information of the individuals in the discovery dataset.
  15. GxEprs::Bphe_target
    Phenotype data file of the target dataset when the outcome is binary. This contains phenotype information of the individuals in the target dataset.
  16. GxEprs::DummyData.bim
    PLINK .bim file
  17. GxEprs::DummyData.fam
    PLINK .fam file
  18. GxEprs::DummyData.map
    PLINK .map file
  19. GxEprs::DummyData.ped
    PLINK .ped file
  20. GxEprs::Qcov_discovery
    Covariate data file of the discovery dataset when the outcome is quantitative. This contains covariate information of the individuals in the discovery dataset following confounders.
  21. GxEprs::Qcov_target
    Covariate data file of the target dataset when the outcome is quantitative. This contains covariate information of the individuals in the target dataset following confounders.
  22. GxEprs::Qphe_discovery
    Phenotype data file of the discovery dataset when the outcome is quantitative. This contains phenotype information of the individuals in the discovery dataset.
  23. GxEprs::Qphe_target
    Phenotype data file of the target dataset when the outcome is quantitative. This contains phenotype information of the individuals in the target dataset.